SMTL ID : 5llt.2 (1 other biounit)

Plasmodium falciparum nicotinic acid mononucleotide adenylyltransferase complexed with NaAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x DND: NICOTINIC ACID ADENINE DINUCLEOTIDE(Non-covalent)

DND.1: 25 residues within 4Å: Chain A: Y.9, G.10, G.11, S.12, F.13, A.19, H.20, V.23, C.41, R.44, K.47, E.80, P.87, T.88, L.108, G.109, D.111, L.112, W.119, D.120, R.136, I.163, N.164, I.166 Ligands: PEG.2 29 PLIP interactions: 29 interactions with chain A Hydrogen bonds: A:Y.9, A:G.10, A:S.12, A:S.12, A:F.13, A:E.80, A:T.88, A:G.109, A:D.111, A:D.120, A:R.136, A:R.136, A:I.166, A:I.166 Water bridges: A:G.10, A:G.11, A:D.14, A:R.44, A:R.44, A:G.107, A:S.168, A:S.168 Salt bridges: A:H.20, A:R.44, A:K.47 pi-Stacking: A:W.119, A:W.119 pi-Cation interactions: A:R.136, A:R.136

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain A: R.44, K.47, S.169, R.172 Ligands: DND.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.44, A:K.47, A:R.172, A:R.172 Water bridges: A:S.169

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: Y.18, E.21, M.22, D.25, K.68, I.163 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.21, A:D.25, A:K.68 EDO.4: 5 residues within 4Å: Chain A: N.29, L.30, N.31, I.70, K.73 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.29, A:K.73 EDO.5: 4 residues within 4Å: Chain A: Y.18, F.162, I.166, K.186 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.186 EDO.6: 6 residues within 4Å: Chain A: W.37, K.77, L.79, Q.95, L.98, H.99 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.77, A:K.77, A:Q.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bathke, J. et al., Structural and Functional Characterization of Plasmodium falciparum Nicotinic Acid Mononucleotide Adenylyltransferase. J. Mol. Biol. (2016)

Release Date

2016-11-30

Peptides

Nicotinate-nucleotide adenylyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Nicotinate-nucleotide adenylyltransferase

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