SMTL ID : 5lmj.4 (3 other biounits)

Llama nanobody PorM_19

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: S.54, T.55, K.56, G.57, G.58, S.59 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.54, A:T.55, A:K.56, A:G.57, A:G.58 PO4.2: 6 residues within 4Å: Chain A: Y.62, V.66, K.67, G.68, F.70, T.71 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.62, A:G.68, A:G.68 Water bridges: A:Y.62 PO4.3: 2 residues within 4Å: Chain A: R.47, W.115 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Duhoo, Y. et al., Camelid nanobodies used as crystallization chaperones for different constructs of PorM, a component of the type IX secretion system from Porphyromonas gingivalis. Acta Crystallogr F Struct Biol Commun (2017)

Release Date

2017-05-03

Peptides

nanobody: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

nanobody

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