SMTL ID : 5loa.1

Crystal structure of the engineered D-Amino Acid Dehydrogenase (DAADH) bound to NADP+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 21 residues within 4Å: Chain A: G.9, Y.10, G.11, N.12, L.13, S.34, R.35, R.36, C.64, M.65, G.66, S.67, T.87, D.89, T.116, G.117, W.118, D.119, P.120, N.269, T.273 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:T.273 Hydrogen bonds: A:Y.10, A:G.11, A:N.12, A:N.12, A:L.13, A:R.35, A:R.35, A:C.64, A:S.67, A:S.67, A:T.87, A:D.89, A:W.118, A:D.119 Water bridges: A:G.14, A:R.15, A:R.15, A:R.36, A:D.70, A:T.87, A:T.87 Salt bridges: A:R.35, A:R.36 pi-Cation interactions: A:R.36, A:R.36 NAP.2: 24 residues within 4Å: Chain B: G.9, Y.10, G.11, N.12, L.13, S.34, R.35, R.36, C.64, M.65, G.66, S.67, T.87, D.89, T.116, G.117, W.118, D.119, P.120, L.149, G.150, R.156, N.269, T.273 32 PLIP interactions: 32 interactions with chain B Hydrophobic interactions: B:L.149, B:T.273 Hydrogen bonds: B:Y.10, B:G.11, B:N.12, B:N.12, B:L.13, B:R.35, B:R.35, B:C.64, B:S.67, B:T.87, B:T.87, B:D.89, B:W.118, B:D.119, B:R.156 Water bridges: B:G.14, B:R.15, B:R.15, B:R.36, B:R.36, B:A.68, B:L.149, B:G.150, B:G.153, B:G.153 Salt bridges: B:R.35, B:R.36, B:R.156 pi-Cation interactions: B:R.36, B:R.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parmeggiani, F. et al., Single-biocatalyst synthesis of enantiopure D-arylalanines exploiting an engineered D-amino acid dehydrogenase. To Be Published

Release Date

2017-08-16

Peptides

Meso-diaminopimelate D-dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Meso-diaminopimelate D-dehydrogenase