SMTL ID : 5lod.1

Crystal structure of HhaI DNA methyltransferase in APO form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: L.155, D.156, F.186, E.187, L.188, P.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.155, A:D.156, A:L.188 SO4.2: 2 residues within 4Å: Chain A: K.193, R.245 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.193, A:R.245 SO4.3: 7 residues within 4Å: Chain A: G.238, I.249, T.250, S.252, F.259, K.261, G.263 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.238, A:S.252, A:K.261, A:G.263 SO4.4: 6 residues within 4Å: Chain B: L.155, D.156, F.186, E.187, L.188, P.224 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.156, B:L.188 Water bridges: B:D.156 SO4.5: 6 residues within 4Å: Chain B: L.26, N.52, F.53, P.286, S.288, Y.289 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rondelet, G. et al., Inhibition studies of DNA methyltransferases by maleimide derivatives of RG108 as non-nucleoside inhibitors. Future Med Chem (2017)

Release Date

2017-08-16

Peptides

Modification methylase HhaI: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Modification methylase HhaI

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