SMTL ID : 5lrv.1

Structure of Cezanne/OTUD7B OTU domain bound to Lys11-linked diubiquitin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: H.219, R.220 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.220 Salt bridges: A:H.219

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: H.219 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.219 GOL.3: 5 residues within 4Å: Chain A: R.26, D.27, M.76 Chain B: A.28, D.32 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.26 GOL.4: 5 residues within 4Å: Chain A: R.180, E.212, V.213, P.214, Q.217 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.217 GOL.5: 8 residues within 4Å: Chain A: L.191, Y.227, Q.229, A.230 Chain C: G.35, I.36, P.37, L.73 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:Y.227, A:Q.229, A:A.230, C:G.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mevissen, T.E. et al., Molecular basis of Lys11-polyubiquitin specificity in the deubiquitinase Cezanne. Nature (2016)

Release Date

2016-10-19

Peptides

OTU domain-containing protein 7B: A
Polyubiquitin-B: B
Polyubiquitin-B: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

OTU domain-containing protein 7B

Polyubiquitin-B

Polyubiquitin-B

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