SMTL ID : 5lsc.2 (1 other biounit)

The structure of the metallo-beta-lactamase VIM-2 in complex with a triazolylthioacetamide inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: A.106, T.126, H.127 Ligands: CL.2, ZN.7 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: A.106, H.127 Ligands: CL.1, ZN.7 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: H.90, D.91, E.120, N.122 Ligands: 752.4 Ligand excluded by PLIP

1 x 752: 2-[5-[2-(1,3-benzothiazol-2-ylamino)-2-oxidanylidene-ethyl]sulfanyl-4~{H}-1,2,4-triazol-3-yl]benzoic acid(Non-covalent)

752.4: 19 residues within 4Å: Chain A: Q.34, F.36, Y.41, W.61, G.62, H.88, H.90, D.91, D.92, H.153, C.172, Y.175, R.179, G.183, N.184, H.214 Ligands: CL.3, ZN.5, ZN.6 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Q.34, A:F.36, A:F.36, A:Y.41, A:W.61, A:W.61 Hydrogen bonds: A:D.91, A:D.92, A:N.184, A:N.184 Water bridges: A:H.153, A:H.153 Salt bridges: A:H.153, A:H.214 pi-Stacking: A:W.61, A:H.214

3 x ZN: ZINC ION(Non-covalent)

ZN.5: 7 residues within 4Å: Chain A: H.88, H.90, D.92, H.153, N.184 Ligands: 752.4, ZN.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.88, A:H.90, A:H.153 ZN.6: 7 residues within 4Å: Chain A: H.88, D.92, R.93, C.172, H.214 Ligands: 752.4, ZN.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.92, A:C.172, A:H.214 ZN.7: 4 residues within 4Å: Chain A: A.106, H.127 Ligands: CL.1, CL.2 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.127, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Christopeit, T. et al., The structure of the metallo-beta-lactamase VIM-2 in complex with a triazolylthioacetamide inhibitor. Acta Crystallogr F Struct Biol Commun (2016)

Release Date

2016-11-09

Peptides

Metallo-beta-lactamase VIM-2-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Metallo-beta-lactamase VIM-2-like protein

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