SMTL ID : 5lsh.1

human lysozyme in complex with a tetrasaccharide fragment of the O-chain of LPS from Klebsiella pneumoniae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.06 Å

Oligo State

monomer

Ligands

1 x TVG- GLA- GZL- GLA: alpha-D-galactopyranose-(1-3)-beta-D-galactofuranose-(1-3)-alpha-D-galactopyranose-(1-3)-propyl beta-D-galactofuranoside(Non-functional Binders)

TVG-GLA-GZL-GLA.1: 13 residues within 4Å: Chain A: Q.58, I.59, N.60, R.62, Y.63, W.64, A.76, R.98, D.102, Q.104, A.108, W.109, V.110 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.60, A:V.110, A:N.60, A:R.98, A:R.98, A:D.102 Water bridges: A:E.35, A:D.53, A:Q.58, A:N.60, A:R.62, A:Q.104

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.107, W.112 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: N.27 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: Q.86, D.87, N.88 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 1 residues within 4Å: Chain A: G.127 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, R. et al., Lysozyme's lectin-like characteristics facilitates its immune defense function. Q. Rev. Biophys. (2017)

Release Date

2017-06-21

Peptides

Lysozyme C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme C

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