SMTL ID : 5lt5.1

Carboxysome shell protein CcmP from Synechococcus elongatus PCC 7942

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-hexamer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: Y.21, V.25, W.39, V.65, V.169, S.170, A.171 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.169, A:A.171 GOL.3: 6 residues within 4Å: Chain A: T.24, R.129, R.130 Chain B: T.24, R.129, R.130 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.130, A:R.130 Water bridges: B:R.129, A:R.130 GOL.4: 7 residues within 4Å: Chain C: Y.21, V.25, W.39, V.65, V.169, S.170, A.171 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:V.169, C:A.171 GOL.6: 6 residues within 4Å: Chain C: T.24, R.129, R.130 Chain D: T.24, R.129, R.130 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:R.130, C:R.130 Water bridges: D:R.129, C:R.130 GOL.7: 7 residues within 4Å: Chain E: Y.21, V.25, W.39, V.65, V.169, S.170, A.171 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:V.169, E:A.171 GOL.9: 6 residues within 4Å: Chain E: T.24, R.129, R.130 Chain F: T.24, R.129, R.130 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:R.130, E:R.130 Water bridges: F:R.129, E:R.130

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: E.184, R.185 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain C: E.184, R.185 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain E: E.184, R.185 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Larsson, A.M. et al., Crystal structures of beta-carboxysome shell protein CcmP: ligand binding correlates with the closed or open central pore. J. Exp. Bot. (2017)

Release Date

2017-04-12

Peptides

CcmP: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

CcmP

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