SMTL ID : 5ltm.1

Crystal structure of phenylalanine ammonia-lyase from Anabaena variabilis (Y78F-C503S-C565S) bound to cinnamate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

homo-tetramer

Ligands

4 x HCI: HYDROCINNAMIC ACID(Non-covalent)

HCI.1: 15 residues within 4Å: Chain A: Q.285, Y.288, R.291 Chain B: F.60, G.61, L.80, F.83, X.143, L.145, H.333, F.337, E.422, N.425, Q.426 Chain D: K.393 12 PLIP interactions: 9 interactions with chain B, 2 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: B:F.60, B:L.80, B:F.83, B:L.145, B:L.145, D:K.393 Hydrogen bonds: B:G.61, B:N.321, B:N.425 Salt bridges: B:H.333, A:R.291 Water bridges: A:Q.285 HCI.2: 12 residues within 4Å: Chain A: F.60, G.61, L.80, X.143, L.145, L.193, F.337, N.425, Q.426 Chain B: Q.285, Y.288, R.291 12 PLIP interactions: 2 interactions with chain B, 10 interactions with chain A Hydrogen bonds: B:Y.288, A:N.425 Salt bridges: B:R.291, A:H.333 Hydrophobic interactions: A:F.60, A:L.80, A:L.145, A:L.145, A:L.193 Water bridges: A:G.61, A:G.61, A:N.321 HCI.3: 15 residues within 4Å: Chain B: K.393 Chain C: Q.285, Y.288, R.291 Chain D: F.60, G.61, L.80, F.83, X.143, L.145, H.333, F.337, E.422, N.425, Q.426 13 PLIP interactions: 9 interactions with chain D, 1 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: D:F.60, D:L.80, D:F.83, D:L.145, D:L.145, B:K.393 Hydrogen bonds: D:G.61, D:N.321, D:N.425, C:Y.288 Salt bridges: D:H.333, C:R.291 Water bridges: C:Q.285 HCI.4: 12 residues within 4Å: Chain C: F.60, G.61, L.80, X.143, L.145, L.193, F.337, N.425, Q.426 Chain D: Q.285, Y.288, R.291 11 PLIP interactions: 10 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:F.60, C:L.80, C:L.145, C:L.145, C:L.193 Hydrogen bonds: C:N.425 Water bridges: C:G.61, C:G.61, C:N.321 Salt bridges: C:H.333, D:R.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weise, N.J. et al., Zymophore identification enables the discovery of novel phenylalanine ammonia lyase enzymes. Sci Rep (2017)

Release Date

2017-09-20

Peptides

phenylalanine ammonia lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
B

D
A

phenylalanine ammonia lyase