SMTL ID : 5lts.1

Crystal structure of Lymphocytic choriomeningitis mammarenavirus endonuclease Mutant D118A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain B: R.113, K.122 Ligands: NA.2, GOL.3 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain B: C.110, K.122 Ligands: CL.1 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:C.110, B:K.122

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain B: S.54, F.111, V.112, R.113, Y.154 Ligands: CL.1 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.112, B:V.112, B:R.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saez-Ayala, M. et al., Crystal structures ofLymphocytic choriomeningitis virusendonuclease domain complexed with diketo-acid ligands. IUCrJ (2018)

Release Date

2017-09-13

Peptides

RNA-directed RNA polymerase L: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RNA-directed RNA polymerase L