SMTL ID : 5lxz.1

W288A mutant of GlxA from Streptomyces lividans: Cu-bound form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: F.79, Y.248, Y.460, H.461, H.548 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.248, A:Y.460, A:H.461, A:H.548, H2O.1 CU.2: 2 residues within 4Å: Chain A: D.53, E.101 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.53, A:D.53, A:E.101, H2O.1

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 2 residues within 4Å: Chain A: R.293, F.337 5 PLIP interactions: 5 interactions with chain A Water bridges: A:F.337, A:F.337, A:K.339 Salt bridges: A:R.293, A:K.339 ACT.4: 6 residues within 4Å: Chain A: D.322, V.323, G.324, T.326, K.339 Ligands: EDO.12 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.324, A:T.326, A:T.326 Water bridges: A:T.326, A:T.326 Salt bridges: A:K.339

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 2 residues within 4Å: Chain A: T.134, R.194 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.134 Water bridges: A:T.141 Salt bridges: A:R.194 PO4.6: 3 residues within 4Å: Chain A: R.471, R.509, K.597 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.471, A:K.597 Salt bridges: A:R.471, A:R.509, A:K.597

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 5 residues within 4Å: Chain A: D.397, G.398, P.399, N.446, E.447 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.446, A:N.446 Water bridges: A:D.397, A:G.398 EDO.8: 5 residues within 4Å: Chain A: V.329, T.338, K.339, V.340, P.393 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.339 Water bridges: A:T.338 EDO.9: 5 residues within 4Å: Chain A: L.215, E.375, R.430, L.480, Y.481 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.375, A:R.430, A:Y.481 EDO.10: 6 residues within 4Å: Chain A: K.537, V.538, R.539, A.558, L.559, F.561 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.538, A:R.539, A:R.539, A:L.559 EDO.11: 6 residues within 4Å: Chain A: N.47, K.218, R.428, D.478, S.479, G.490 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.47, A:R.428, A:R.428, A:G.490 Water bridges: A:Q.49 EDO.12: 6 residues within 4Å: Chain A: R.293, Q.294, F.295, G.324, F.337 Ligands: ACT.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.293, A:Q.294, A:Q.294, A:G.324 EDO.13: 6 residues within 4Å: Chain A: L.254, G.255, D.256, L.303, G.307, E.333 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.255, A:D.256, A:D.256, A:G.307 Water bridges: A:D.256 EDO.14: 5 residues within 4Å: Chain A: T.289, D.290, K.291, V.332, E.333 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.290, A:K.291 Water bridges: A:T.289, A:D.290 EDO.15: 7 residues within 4Å: Chain A: G.82, H.83, P.249, T.250, L.251, Y.298, T.547 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.83, A:H.83, A:L.251, A:L.251 EDO.16: 4 residues within 4Å: Chain A: E.190, Q.294, P.320, V.323 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.190, A:Q.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaplin, A.K. et al., The role of a second-coordination sphere tryptophan residue in the maturation of the catalytic metalloradical site in the auxillary activity family 5 (AA5) GlxA from Streptomyces lividans. to be published

Release Date

2017-07-26

Peptides

Secreted protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Secreted protein