SMTL ID : 5lyr.1

Structure of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with mannose-alpha-1,3-noeuromycin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.14 Å

Oligo State

monomer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 2 residues within 4Å: Chain A: K.212, S.219 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.219, A:S.219 Salt bridges: A:K.212 ACT.2: 7 residues within 4Å: Chain A: Y.44, D.45, F.47, Y.189, K.191, L.196, A.330 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.47, A:K.191, A:L.196 Hydrogen bonds: A:D.45, A:Y.189, A:Y.189 Salt bridges: A:K.191

1 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.3: 9 residues within 4Å: Chain A: W.53, H.65, H.68, I.299, R.300, E.338, H.340, E.341 Ligands: MNM.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.300, A:R.300, A:E.341 Water bridges: A:H.65, A:H.68

1 x MNM: (2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-HYDROXYMETHYL-PIPERIDINE(Non-covalent)

MNM.4: 10 residues within 4Å: Chain A: Y.51, W.53, W.131, H.159, E.161, Y.200, Y.257, E.338, E.341 Ligands: MAN.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.200 Water bridges: A:R.300, A:E.341, A:E.341, A:E.341, A:E.341, A:E.341

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petricevic, M. et al., Contribution of Shape and Charge to the Inhibition of a Family GH99 endo-alpha-1,2-Mannanase. J. Am. Chem. Soc. (2017)

Release Date

2017-01-11

Peptides

Glycosyl hydrolase family 71: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyl hydrolase family 71

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