SMTL ID : 5lyw.1

CRYSTAL STRUCTURE OF HUMAN METHIONINE AMINOPEPTIDASE-2 IN COMPLEX; WITH AN INHIBITOR 6-((R)-2-o-Tolyloxymethyl-pyrrolidin-1-yl)-9H-purine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x 7BH: 6-[(2~{R})-2-[(2-methylphenoxy)methyl]pyrrolidin-1-yl]-7~{H}-purine(Non-covalent)

7BH.1: 14 residues within 4Å: Chain A: F.113, H.125, D.145, D.156, H.225, I.232, H.233, E.258, H.276, M.278, A.308, Y.338 Ligands: MN.2, MN.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.233, A:A.308, A:Y.338, A:Y.338 Water bridges: A:Q.351 pi-Stacking: A:H.233

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 7 residues within 4Å: Chain A: D.156, H.225, A.256, E.258, E.353 Ligands: 7BH.1, MN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.156, A:H.225, A:E.258, A:E.353 MN.3: 5 residues within 4Å: Chain A: D.145, D.156, E.353 Ligands: 7BH.1, MN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.145, A:D.145, A:D.156, A:E.353

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heinrich, T. et al., Novel reversible methionine aminopeptidase-2 (MetAP-2) inhibitors based on purine and related bicyclic templates. Bioorg. Med. Chem. Lett. (2017)

Release Date

2017-08-16

Peptides

Methionine aminopeptidase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase 2

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