SMTL ID : 5m2s.1

R. flavefaciens' third ScaB cohesin in complex with a group 1 dockerin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: A.133 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:A.133, H2O.2, H2O.5, H2O.7 CA.4: 5 residues within 4Å: Chain B: D.74, N.76, N.80, G.81, D.86 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.74, B:N.76, B:G.81, B:D.86, H2O.10 CA.5: 5 residues within 4Å: Chain B: D.30, N.32, D.34, I.36, D.41 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.30, B:D.34, B:I.36, B:D.41, H2O.10

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: V.30, D.31, S.32, K.33, N.34, V.88, P.89, T.90, K.91 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.32, A:S.32, A:N.34, A:N.34, A:K.91, A:K.91 GOL.3: 7 residues within 4Å: Chain A: A.45, I.46, D.47, N.111, V.112, G.113, F.114 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.46, A:D.47 Water bridges: A:I.46, A:F.114, A:F.114 GOL.6: 3 residues within 4Å: Chain B: Y.93, L.94, N.96 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:L.94, B:N.96 Water bridges: B:N.96, A:K.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bule, P. et al., Assembly of Ruminococcus flavefaciens cellulosome revealed by structures of two cohesin-dockerin complexes. Sci Rep (2017)

Release Date

2017-07-05

Peptides

Putative cellulosomal scaffoldin protein: A
Doc8: Type I dockerin repeat domain from family 9 glycoside hydrolase WP_009982745[Ruminococcus flavefaciens]: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative cellulosomal scaffoldin protein

Doc8: Type I dockerin repeat domain from family 9 glycoside hydrolase WP_009982745[Ruminococcus flavefaciens]