SMTL ID : 5m5z.1

Chaetomium thermophilum beta-1-3-glucanase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.168, V.170, D.198, V.200, N.219 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.170, A:V.200 NAG-NAG.2: 8 residues within 4Å: Chain A: P.258, D.259, G.260, Q.261, Q.288, H.290, N.292, N.745 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.259

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: N.614, N.674 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.614 Water bridges: A:N.674, A:N.674 NAG.4: 3 residues within 4Å: Chain A: K.529, N.530, N.532 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.530 Hydrogen bonds: A:N.532

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain A: F.134, Q.162, W.562, W.564, D.567, H.568, E.603, H.604, E.626 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.162, A:D.567, A:H.568, A:E.603, A:E.626 Water bridges: A:S.192, A:S.192, A:S.192, A:Y.629

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain A: S.165, D.509, N.560 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 1 residues within 4Å: Chain A: D.408 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.408

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Papageorgiou, A.C. et al., Crystal structure and biological implications of a glycoside hydrolase family 55 beta-1,3-glucanase from Chaetomium thermophilum. Biochim. Biophys. Acta (2017)

Release Date

2017-05-17

Peptides

Beta-1,3-glucanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-1,3-glucanase

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