SMTL ID : 5m7y.1

Crystal structure of GH125 1,6-alpha-mannosidase mutant from Clostridium perfringens in complex with 1,6-alpha-mannotriose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x MAN- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose

MAN-MAN-MAN.1: 19 residues within 4Å: Chain A: T.55, I.58, W.62, R.64, D.65, W.116, E.129, K.131, R.188, D.195, P.218, S.219, N.220, N.302, H.350, W.357, R.405, F.408, W.410 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.55, A:R.64, A:R.64, A:N.220, A:N.302, A:H.350, A:R.405, A:R.405

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: G.152 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.152, H2O.2, H2O.10, H2O.10 MG.3: 1 residues within 4Å: Chain A: R.179 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alonso-Gil, S. et al., Computational Design of Experiment Unveils the Conformational Reaction Coordinate of GH125 alpha-Mannosidases. J. Am. Chem. Soc. (2017)

Release Date

2016-11-30

Peptides

1,6-alpha-mannosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

1,6-alpha-mannosidase

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