SMTL ID : 5m81.3 (3 other biounits)

Translation initiation factor 4E in complex with (SP)-iPr-m7GppSpG mRNA 5' cap analog

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 7L2: [[[(3~{a}~{R},4~{R},6~{R},6~{a}~{R})-4-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-7-ium-9-yl)-2,2-dimethyl-3~{a},4,6,6~{a}-tetrahydrofuro[3,4-d][1,3]dioxol-6-yl]methoxy-oxidanyl-phosphoryl]oxy-sulfanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate(Non-covalent)

7L2.1: 12 residues within 4Å: Chain A: D.24, K.25, K.27, T.28, W.29, N.32, M.74, W.75, E.76, R.130, K.135, W.139 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.27, A:N.32, A:W.75, A:K.135 Water bridges: A:D.63, A:R.130 Salt bridges: A:E.76, A:R.130, A:K.135 pi-Stacking: A:W.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Warminski, M. et al., Translation initiation factor 4E in complex with (SP)-iPr-m7GppSpG mRNA 5' cap analog. To Be Published

Release Date

2017-12-20

Peptides

Eukaryotic translation initiation factor 4E: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Eukaryotic translation initiation factor 4E

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