SMTL ID : 5m83.1 (1 other biounit)

Translation initiation factor 4E in complex with (RP)-m2(7,2'O)GppSpA mRNA 5' cap analog

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x YDZ: [[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-sulfanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanyl-purin-7-ium-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl hydrogen phosphate(Non-covalent)

YDZ.1: 7 residues within 4Å: Chain A: W.29, M.74, W.75, E.76, N.128, R.130, K.135 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:W.75, A:R.130 Water bridges: A:R.85, A:N.128, A:N.128 Salt bridges: A:E.76, A:R.130, A:K.135 pi-Stacking: A:W.29, A:W.29, A:W.29, A:W.75, A:W.75

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: I.88, T.89, Q.94, I.168 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.89, A:T.89, A:Q.94, A:Q.94 Water bridges: A:T.89, A:V.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Warminski, M. et al., Translation initiation factor 4E in complex with (RP)-m2(7,2'O)GppSpA mRNA 5' cap analog. To Be Published

Release Date

2017-12-20

Peptides

Eukaryotic translation initiation factor 4E: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Eukaryotic translation initiation factor 4E

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