SMTL ID : 5m86.1 (1 other biounit)

Crystal Structure of the Thermoplasma acidophilum Protein Ta1207

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-pentamer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: D.219, T.221 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.219, A:D.219, A:T.221 CA.4: 3 residues within 4Å: Chain B: D.219, T.221, N.247 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.219, B:D.219, B:T.221, H2O.4, H2O.6 CA.7: 3 residues within 4Å: Chain C: D.219, T.221, N.247 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.219, C:D.219, C:T.221, H2O.7, H2O.9 CA.10: 3 residues within 4Å: Chain D: D.219, T.221, N.247 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.219, D:T.221, H2O.9, H2O.12, H2O.13 CA.13: 3 residues within 4Å: Chain E: D.219, T.221, N.247 4 PLIP interactions: 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.219, E:D.219, E:T.221, H2O.16

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: R.201, E.202, Y.214, R.277, W.278, S.279 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain B: R.201, E.202, Y.214, R.277, W.278, S.279 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain C: R.201, E.202, Y.214, R.277, W.278, S.279 Ligand excluded by PLIP CL.11: 6 residues within 4Å: Chain D: R.201, E.202, Y.214, R.277, W.278, S.279 Ligand excluded by PLIP CL.14: 6 residues within 4Å: Chain E: R.201, E.202, Y.214, R.277, W.278, S.279 Ligand excluded by PLIP

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 11 residues within 4Å: Chain A: L.39, F.55, I.84, M.113, N.271, V.272, Y.273, L.275, T.293, D.295, F.296 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.271, A:Y.273, A:Y.273, A:Y.273, A:D.295 Water bridges: A:L.39 GOL.6: 10 residues within 4Å: Chain B: L.39, F.55, I.84, M.113, N.271, V.272, Y.273, L.275, T.293, D.295 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.273, B:Y.273 Water bridges: B:T.293, B:D.295 GOL.9: 11 residues within 4Å: Chain C: L.39, F.55, Q.57, I.84, M.113, N.271, V.272, Y.273, L.275, T.293, D.295 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.271, C:Y.273, C:T.293 GOL.12: 10 residues within 4Å: Chain D: L.39, F.55, I.84, M.113, N.271, V.272, Y.273, L.275, T.293, D.295 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.271, D:Y.273, D:D.295 GOL.15: 10 residues within 4Å: Chain E: L.39, F.55, I.84, M.113, N.271, V.272, Y.273, L.275, T.293, D.295 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:Y.273, E:T.293, E:D.295, E:D.295 Water bridges: E:T.293, E:T.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pathare, G.R. et al., Crystal structure of the Thermoplasma acidophilum protein Ta1207. Acta Crystallogr F Struct Biol Commun (2017)

Release Date

2017-06-14

Peptides

Ta1207: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
F

Ta1207

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