SMTL ID : 5m8l.2 (3 other biounits)

Crystal structure of human tyrosinase related protein 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 7 residues within 4Å: Chain A: R.13, S.14, G.15, L.68, R.69, F.70, N.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.68

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.2: 4 residues within 4Å: Chain A: R.4, P.133, F.155, N.157 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.4

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 5 residues within 4Å: Chain A: R.140, E.156, S.268, D.271, N.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.271 NAG-NAG.5: 6 residues within 4Å: Chain A: G.293, N.294, V.295, A.296, N.361, G.362 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- MAN- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-MAN-FUC.4: 4 residues within 4Å: Chain A: Q.54, E.186, Y.324, N.326 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Q.54

2 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain A: H.168, H.191, H.200 Ligands: ZN.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.168, A:H.191, A:H.200, H2O.2 ZN.7: 5 residues within 4Å: Chain A: H.353, H.357, F.376, H.380 Ligands: ZN.6 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.353, A:H.357, A:H.380, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lai, X. et al., Structure of Human Tyrosinase Related Protein 1 Reveals a Binuclear Zinc Active Site Important for Melanogenesis. Angew. Chem. Int. Ed. Engl. (2017)

Release Date

2017-07-12

Peptides

5,6-dihydroxyindole-2-carboxylic acid oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

5,6-dihydroxyindole-2-carboxylic acid oxidase

Related Entries With Identical Sequence