SMTL ID : 5m8q.2 (3 other biounits)

Crystal structure of human tyrosinase related protein 1 mutant (T391V-R374S-Y362F) in complex with kojic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 4 residues within 4Å: Chain A: R.4, T.131, F.155, N.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.4, A:N.157

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.2: 3 residues within 4Å: Chain A: R.13, G.15, N.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.13, A:N.72 NAG.3: 6 residues within 4Å: Chain A: R.140, E.156, S.268, D.271, Y.272, N.280 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.140, A:R.140, A:S.268, A:S.268, A:N.280 NAG.4: 7 residues within 4Å: Chain A: G.293, N.294, V.295, A.296, N.361, G.362, Q.366 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.294, A:V.295, A:A.296

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 7 residues within 4Å: Chain A: H.168, H.191, H.200, F.376, H.380 Ligands: ZN.6, KOJ.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.168, A:H.191, A:H.200, H2O.1 ZN.6: 7 residues within 4Å: Chain A: H.200, H.353, H.357, F.376, H.380 Ligands: ZN.5, KOJ.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.353, A:H.357, A:H.380, H2O.1

1 x KOJ: 5-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE(Non-covalent)

KOJ.7: 13 residues within 4Å: Chain A: H.168, H.191, H.353, N.354, H.357, L.358, G.364, G.365, Q.366, V.367, S.370 Ligands: ZN.5, ZN.6 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:H.357 Hydrogen bonds: A:N.354, A:S.370, A:S.370 pi-Stacking: A:H.357

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lai, X. et al., Structure of Human Tyrosinase Related Protein 1 Reveals a Binuclear Zinc Active Site Important for Melanogenesis. Angew. Chem. Int. Ed. Engl. (2017)

Release Date

2017-07-12

Peptides

5,6-dihydroxyindole-2-carboxylic acid oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

5,6-dihydroxyindole-2-carboxylic acid oxidase

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