- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.46 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x PPV: PYROPHOSPHATE(Non-covalent)
PPV.2: 10 residues within 4Å:- Chain A: M.85, D.86, A.87, G.88, G.89, K.90, D.91, R.202
- Ligands: ADP.1, MG.3
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:A.87, A:G.88, A:G.89, A:K.90, A:D.91
- Water bridges: A:G.92
- Salt bridges: A:K.90, A:K.90, A:R.202
PPV.5: 12 residues within 4Å:- Chain B: M.85, D.86, A.87, G.88, G.89, K.90, D.91, R.142, R.202, K.211
- Ligands: ADP.4, MG.6
13 PLIP interactions:13 interactions with chain B- Hydrogen bonds: B:D.86, B:A.87, B:G.88, B:G.89, B:K.90, B:D.91, B:D.91, B:R.142
- Salt bridges: B:K.90, B:K.90, B:R.202, B:K.211, B:K.211
PPV.9: 10 residues within 4Å:- Chain C: M.85, D.86, A.87, G.88, G.89, K.90, D.91, R.202, K.211
- Ligands: ADP.8
12 PLIP interactions:12 interactions with chain C- Hydrogen bonds: C:M.85, C:D.86, C:A.87, C:G.88, C:G.89, C:K.90, C:D.91
- Salt bridges: C:K.90, C:K.90, C:R.202, C:K.211, C:K.211
PPV.11: 11 residues within 4Å:- Chain D: M.85, D.86, A.87, G.88, G.89, K.90, D.91, R.142, R.202
- Ligands: ADP.10, MG.12
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:D.86, D:A.87, D:G.88, D:G.89, D:K.90, D:D.91, D:R.142
- Salt bridges: D:K.90, D:K.90, D:R.202
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 3 residues within 4Å:- Chain A: K.211
- Ligands: ADP.1, PPV.2
No protein-ligand interaction detected (PLIP)MG.6: 3 residues within 4Å:- Chain B: K.211
- Ligands: ADP.4, PPV.5
No protein-ligand interaction detected (PLIP)MG.7: 3 residues within 4Å:- Chain B: D.86, D.216
- Ligands: ADP.4
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.86
MG.12: 3 residues within 4Å:- Chain D: K.211
- Ligands: ADP.10, PPV.11
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Parnell, A.E. et al., Substrate recognition and mechanism revealed by ligand-bound polyphosphate kinase 2 structures. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2017-12-20
- Peptides
- Polyphosphate:AMP phosphotransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.46 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x PPV: PYROPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Parnell, A.E. et al., Substrate recognition and mechanism revealed by ligand-bound polyphosphate kinase 2 structures. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2017-12-20
- Peptides
- Polyphosphate:AMP phosphotransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D