SMTL ID : 5mc8.1

Structure of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with mannose-alpha-1,3-D-glucal and alpha-1,2-mannobiose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

monomer

Ligands

1 x DGO- MAN: alpha-D-mannopyranose-(1-3)-D-glucal(Non-covalent)

DGO-MAN.1: 14 residues within 4Å: Chain A: Y.51, H.65, H.68, W.131, H.159, E.161, Y.200, Y.257, I.299, R.300, E.338, H.340, E.341 Ligands: MAN-MAN.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.161, A:R.300, A:E.341 Water bridges: A:H.65

1 x MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose(Non-covalent)

MAN-MAN.2: 13 residues within 4Å: Chain A: Y.200, D.201, Y.203, Y.257, F.258, F.263, T.264, Y.294, R.300, N.303, E.341 Ligands: DGO-MAN.1, DGO-MAN.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.300, A:R.300, A:N.303 Water bridges: A:N.303

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: T.311, Q.314, Y.315 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.311

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 8 residues within 4Å: Chain A: V.156, C.157, F.158, F.188, Y.189, P.195, L.196, F.197 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.158, A:Y.189, A:L.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petricevic, M. et al., Contribution of Shape and Charge to the Inhibition of a Family GH99 endo-alpha-1,2-Mannanase. J. Am. Chem. Soc. (2017)

Release Date

2017-01-11

Peptides

Glycosyl hydrolase family 71: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyl hydrolase family 71

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