SMTL ID : 5mdm.1 (1 other biounit)

Structural intermediates in the fusion associated transition of vesiculovirus glycoprotein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain B: N.163 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.2: 2 residues within 4Å: Chain B: N.323, K.366 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: L.185, T.186, K.207 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.186, A:T.186, A:T.186 Salt bridges: A:K.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baquero, E. et al., Structural intermediates in the fusion-associated transition of vesiculovirus glycoprotein. EMBO J. (2017)

Release Date

2016-12-14

Peptides

Glycoprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Glycoprotein

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