- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NAG- NAG- NAG- NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 9 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)
C8E.4: 8 residues within 4Å:- Chain A: D.202, V.225, G.226, A.239, Q.240, Y.241, M.259
- Ligands: C8E.9
No protein-ligand interaction detected (PLIP)C8E.5: 2 residues within 4Å:- Chain A: Y.205, Y.223
No protein-ligand interaction detected (PLIP)C8E.6: 9 residues within 4Å:- Chain A: F.280, N.291, S.293, D.294, D.295, D.319, F.320, E.322
- Ligands: C8E.9
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.293
C8E.7: 5 residues within 4Å:- Chain A: G.262, L.263, L.274, Y.276
- Ligands: C8E.8
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.263, A:Y.276
C8E.8: 4 residues within 4Å:- Chain A: A.261, Y.276
- Ligands: C8E.7, C8E.9
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:A.261
C8E.9: 5 residues within 4Å:- Chain A: Y.276, F.280
- Ligands: C8E.4, C8E.6, C8E.8
No protein-ligand interaction detected (PLIP)C8E.14: 4 residues within 4Å:- Chain B: F.231, N.233, I.235, F.237
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.231, B:F.231, B:F.237
- Hydrogen bonds: B:N.233
C8E.15: 3 residues within 4Å:- Chain B: M.259, Y.276, F.280
No protein-ligand interaction detected (PLIP)C8E.19: 5 residues within 4Å:- Chain C: F.231, E.232, N.233, I.235, F.237
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:I.235, C:F.237
- Hydrogen bonds: C:E.232, C:N.233
- 9 x NA: SODIUM ION(Non-functional Binders)
NA.10: 3 residues within 4Å:- Chain A: Q.148, Q.151, D.176
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.148, A:Q.151
NA.11: 4 residues within 4Å:- Chain A: D.45, N.46, G.48
- Chain C: G.183
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.46
NA.12: 3 residues within 4Å:- Chain A: D.83, P.84, G.87
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.84, A:G.87
NA.13: 4 residues within 4Å:- Chain A: G.183
- Chain B: D.45, N.46, G.48
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.48
NA.16: 3 residues within 4Å:- Chain B: D.83, P.84, G.87
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:P.84
NA.17: 3 residues within 4Å:- Chain B: Q.148, Q.151, D.176
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.151, B:D.176
NA.18: 4 residues within 4Å:- Chain B: G.183
- Chain C: D.45, N.46, G.48
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.45
NA.20: 3 residues within 4Å:- Chain C: Q.148, Q.151, D.176
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Q.148, C:Q.151
NA.21: 3 residues within 4Å:- Chain C: D.83, P.84, G.87
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:P.84, C:G.87
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aunkham, A. et al., Structural basis for chitin acquisition by marine Vibrio species. Nat Commun (2018)
- Release Date
- 2017-12-20
- Peptides
- Chitoporin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NAG- NAG- NAG- NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 9 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)
- 9 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aunkham, A. et al., Structural basis for chitin acquisition by marine Vibrio species. Nat Commun (2018)
- Release Date
- 2017-12-20
- Peptides
- Chitoporin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.