SMTL ID : 5mf1.1

Crystal structure of a C-terminally truncated trimeric ectodomain of the Chlamydomonas reinhardtii gamete fusion protein HAP2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-trimer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: T.450, G.451, A.452, A.453, Y.475, N.477 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.477 NAG.3: 6 residues within 4Å: Chain B: T.450, G.451, A.452, A.453, Y.475, N.477 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:A.453 Hydrogen bonds: B:N.477 NAG.5: 6 residues within 4Å: Chain C: T.450, G.451, A.452, A.453, Y.475, N.477 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.477

3 x NGA: 2-acetamido-2-deoxy-beta-D-galactopyranose(Post Translational Modification)

NGA.2: 3 residues within 4Å: Chain A: A.532, F.555, T.557 No protein-ligand interaction detected (PLIP) NGA.4: 3 residues within 4Å: Chain B: A.532, F.555, T.557 No protein-ligand interaction detected (PLIP) NGA.6: 3 residues within 4Å: Chain C: A.532, F.555, T.557 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fedry, J. et al., The Ancient Gamete Fusogen HAP2 Is a Eukaryotic Class II Fusion Protein. Cell (2017)

Release Date

2017-03-08

Peptides

Fusion protein HAP2/GCS1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Fusion protein HAP2/GCS1