SMTL ID : 5mfd.4 (7 other biounits)

Designed armadillo repeat protein YIIIM''6AII in complex with pD_(KR)5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

10 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 2 residues within 4Å: Chain A: P.58, E.60 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:P.58, A:E.60, H2O.1 CA.2: 2 residues within 4Å: Chain A: P.268, E.270 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:P.268, A:E.270 CA.3: 2 residues within 4Å: Chain A: P.184, E.186 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:P.184, A:E.186 CA.4: 2 residues within 4Å: Chain A: P.100, E.102 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:P.100, A:E.102 CA.5: 2 residues within 4Å: Chain A: P.16, Q.18 No protein-ligand interaction detected (PLIP) CA.6: 2 residues within 4Å: Chain A: E.320, E.323 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.320, A:E.323 CA.7: 2 residues within 4Å: Chain A: P.142, E.144 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:P.142, A:E.144, H2O.1 CA.8: 2 residues within 4Å: Chain A: P.226, E.228 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:P.226, A:E.228 CA.9: 1 residues within 4Å: Chain A: Q.103 No protein-ligand interaction detected (PLIP) CA.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hansen, S. et al., Structures of designed armadillo repeat proteins binding to peptides fused to globular domains. Protein Sci. (2017)

Release Date

2017-07-19

Peptides

YIIIM''6AII: A
Capsid decoration protein,pD_(KR)5: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

YIIIM''6AII

Capsid decoration protein,pD_(KR)5

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