SMTL ID : 5mhj.1

ICP4 DNA-binding domain, lacking intrinsically disordered region, in complex with 12mer DNA duplex from its own promoter

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-dimer

Ligands

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 5 residues within 4Å: Chain A: A.88, T.91, R.154, W.157, N.196 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.88 Hydrogen bonds: A:T.91, A:N.196 Water bridges: A:A.88, A:R.154, B:Y.17 Salt bridges: A:R.154 ACY.3: 7 residues within 4Å: Chain A: A.11, T.12 Chain B: A.88, T.91, R.154, W.157, N.196 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:A.88 Hydrogen bonds: B:T.91, B:N.196 Water bridges: B:R.154, B:N.196 Salt bridges: B:R.154

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: R.186 Chain B: V.25, S.26 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tunnicliffe, R.B. et al., The herpes viral transcription factor ICP4 forms a novel DNA recognition complex. Nucleic Acids Res. (2017)

Release Date

2017-05-24

Peptides

Major viral transcription factor ICP4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Major viral transcription factor ICP4