SMTL ID : 5mi8.1 (1 other biounit)

Structure of the phosphomimetic mutant of EF-Tu T383E

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.34 Ligands: GDP.3 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.34, H2O.1, H2O.1, H2O.2, H2O.2 MG.2: 1 residues within 4Å: Chain A: D.363 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.363, H2O.1, H2O.1, H2O.2

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 16 residues within 4Å: Chain A: H.28, V.29, D.30, H.31, G.32, K.33, T.34, T.35, F.55, N.144, K.145, D.147, S.182, A.183, L.184 Ligands: MG.1 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:D.30, A:D.30, A:H.31, A:G.32, A:K.33, A:T.34, A:T.34, A:T.35, A:T.35, A:N.144, A:K.145, A:K.145, A:A.183, A:L.184 Water bridges: A:T.34, A:T.34, A:T.34, A:D.59, A:D.89, A:P.91, A:P.91 Salt bridges: A:K.33, A:D.147

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 4 residues within 4Å: Chain A: R.132, G.135, V.136, P.137 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.137 Water bridges: A:R.132 Salt bridges: A:R.132 ACT.5: 3 residues within 4Å: Chain A: M.121, P.122, R.125 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.122 Hydrogen bonds: A:M.121 Salt bridges: A:R.125 ACT.6: 3 residues within 4Å: Chain A: I.215, D.216, I.244 No protein-ligand interaction detected (PLIP)

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.7: 6 residues within 4Å: Chain A: L.274, D.275, E.276, G.277, R.278, E.281 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.275, A:E.276, A:E.276, A:E.276, A:R.278, A:R.278 Water bridges: A:E.281 Salt bridges: A:E.276, A:E.276, A:R.278

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.8: 1 residues within 4Å: Chain A: R.297 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.297 BME.9: 1 residues within 4Å: Chain A: D.170 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Talavera, A. et al., Phosphorylation decelerates conformational dynamics in bacterial translation elongation factors. Sci Adv (2018)

Release Date

2017-12-20

Peptides

Elongation factor Tu 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Elongation factor Tu 1

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