SMTL ID : 5min.1

Apo form of the soluble PQQ-dependent Glucose Dehydrogenase from Acinetobacter calcoaceticus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: E.253, Y.263 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.253, A:Y.263, H2O.1, H2O.2, H2O.11 CA.2: 4 residues within 4Å: Chain A: A.269, Y.271, D.273, E.309 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:A.269, A:Y.271, A:D.273, H2O.4, H2O.6 CA.3: 2 residues within 4Å: Chain A: A.350, R.406 No protein-ligand interaction detected (PLIP) CA.5: 2 residues within 4Å: Chain B: E.253, Y.263 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.253, H2O.23, H2O.23, H2O.26, H2O.32 CA.6: 4 residues within 4Å: Chain B: A.269, Y.271, D.273, E.309 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:A.269, B:Y.271, B:E.309, H2O.23, H2O.26 CA.7: 1 residues within 4Å: Chain B: H.193 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: T.183, Q.185 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stines-Chaumeil, C. et al., Apo form of the soluble PQQ-dependent Glucose Dehydrogenase from Acinetobacter calcoaceticus. To Be Published

Release Date

2017-12-20

Peptides

Quinoprotein glucose dehydrogenase B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Quinoprotein glucose dehydrogenase B