SMTL ID : 5msy.3 (2 other biounits)

Glycoside hydrolase BT_1012

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: R.198, R.200 Ligands: PO4.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.223 Salt bridges: A:R.198, A:R.200 PO4.2: 5 residues within 4Å: Chain A: R.223, R.228, F.229, G.230 Ligands: PO4.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.229, A:G.230 Salt bridges: A:R.223, A:R.228

4 x NH3: AMMONIA(Non-covalent)

NH3.3: 6 residues within 4Å: Chain A: E.40, T.41, G.305, H.306, I.309, M.310 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.40, A:T.41, A:H.306, A:M.310 NH3.4: 7 residues within 4Å: Chain A: T.41, W.43, Q.70, G.263, E.264, Y.267, T.303 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.70, A:Y.267, A:Y.267 NH3.5: 6 residues within 4Å: Chain A: I.261, D.262, S.294, S.299, G.301, H.302 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.262, A:S.294, A:S.299, A:S.299, A:H.302 NH3.6: 7 residues within 4Å: Chain A: P.46, E.47, R.48, L.49, N.81, I.82, H.108 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.47, A:I.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ndeh, D. et al., Complex pectin metabolism by gut bacteria reveals novel catalytic functions. Nature (2017)

Release Date

2017-03-22

Peptides

Glycoside hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Glycoside hydrolase

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