SMTL ID : 5mw2.1

CRYSTAL STRUCTURE OF BCL-6 BTB-domain with BI-3802

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x U52: 2-[6-[[5-chloranyl-2-[(3~{S},5~{R})-3,5-dimethylpiperidin-1-yl]pyrimidin-4-yl]amino]-1-methyl-2-oxidanylidene-quinolin-3-yl]oxy-~{N}-methyl-ethanamide(Non-covalent)

U52.1: 15 residues within 4Å: Chain A: M.48, A.49, C.50, G.52, Y.55, F.86, Q.110, M.111, E.112, H.113, V.114 Chain B: F.8, N.18, R.21, L.22 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.55 Hydrogen bonds: A:M.48, A:E.112, A:E.112, A:H.113, A:H.113, A:V.114, B:H.11 pi-Stacking: A:Y.55 U52.2: 15 residues within 4Å: Chain A: F.8, N.18, R.21, L.22 Chain B: M.48, A.49, C.50, G.52, Y.55, F.86, Q.110, M.111, E.112, H.113, V.114 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.55 Hydrogen bonds: B:M.48, B:E.112, B:H.113, B:V.114, A:H.11 pi-Stacking: B:Y.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kerres, N. et al., Chemically Induced Degradation of the Oncogenic Transcription Factor BCL6. Cell Rep (2017)

Release Date

2017-10-04

Peptides

B-cell lymphoma 6 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

B-cell lymphoma 6 protein

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