SMTL ID : 5mwd.1

Crystal structure of the BCL6 BTB-domain with compound 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x TJ3: 5-[[5-chloranyl-2-(3,5-dimethylpyrazol-1-yl)pyrimidin-4-yl]amino]-1,3-dihydroindol-2-one(Non-covalent)

TJ3.1: 12 residues within 4Å: Chain A: M.48, A.49, C.50, S.51, G.52, Y.55, Q.110, M.111, E.112 Chain B: N.18, R.21, L.22 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Water bridges: B:R.25, A:H.113 Hydrophobic interactions: A:Y.55 Hydrogen bonds: A:M.48, A:E.112 TJ3.2: 12 residues within 4Å: Chain A: N.18, R.21, L.22 Chain B: M.48, A.49, C.50, S.51, G.52, Y.55, Q.110, M.111, E.112 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.55 Hydrogen bonds: B:M.48, B:E.112 Water bridges: B:H.113, A:R.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kerres, N. et al., Chemically Induced Degradation of the Oncogenic Transcription Factor BCL6. Cell Rep (2017)

Release Date

2017-10-04

Peptides

B-cell lymphoma 6 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

B-cell lymphoma 6 protein

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