SMTL ID : 5mya.1

Homodimerization of Tie2 Fibronectin-like domains 1-3 in space group C2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.45, E.49, P.50, E.81 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 4 residues within 4Å: Chain A: K.135, N.141, T.143, S.180 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 3 residues within 4Å: Chain B: N.141, T.179, S.180 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.177 No protein-ligand interaction detected (PLIP) NAG.5: 4 residues within 4Å: Chain A: N.230, T.232, S.235, Q.279 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.230 NAG.6: 1 residues within 4Å: Chain B: N.177 No protein-ligand interaction detected (PLIP) NAG.7: 2 residues within 4Å: Chain B: N.230, Q.279 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.230, B:Q.279, B:Q.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leppanen, V.M. et al., Structural basis of Tie2 activation and Tie2/Tie1 heterodimerization. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-04-26

Peptides

Angiopoietin-1 receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Angiopoietin-1 receptor

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