SMTL ID : 5mzo.1

UDP-Glucose Glycoprotein Glucosyltransferase from Chaetomium thermophilum (open conformation)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.48 Å

Oligo State

monomer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: G.320, Q.872, N.874 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 1 residues within 4Å: Chain A: N.1207 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain A: N.309, V.310 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.2: 6 residues within 4Å: Chain A: N.36, T.38, I.39, D.72, G.73, H.74 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 4 residues within 4Å: Chain A: M.616, N.618, S.620, M.621 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.6: 3 residues within 4Å: Chain A: D.1282, D.1284, D.1415 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.1282, A:D.1284, A:D.1284, A:D.1415, A:D.1415

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 9 residues within 4Å: Chain A: P.980, L.1020, E.1022, Y.1060, Q.1062, K.1244, W.1245, P.1246, H.1247 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.1247 EDO.8: 9 residues within 4Å: Chain A: S.21, P.22, P.23, Y.24, D.58, R.90, H.202, E.205, K.955 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.21, A:S.21, A:Y.24, A:R.90, A:R.90, A:H.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roversi, P. et al., Interdomain conformational flexibility underpins the activity of UGGT, the eukaryotic glycoprotein secretion checkpoint. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-07-26

Peptides

UDP-glucose-glycoprotein glucosyltransferase-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-glucose-glycoprotein glucosyltransferase-like protein

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