SMTL ID : 5n05.1

X-ray crystal structure of an LPMO

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose

BGC-BGC-BGC-BGC-BGC-BGC.1: 14 residues within 4Å: Chain A: H.1, N.28, H.66, N.67, A.75, S.77, H.78, H.147, E.148, R.159, Y.203, T.204 Ligands: CU.2, CL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.28, A:Y.164, A:Y.164

1 x CU: COPPER (II) ION(Non-covalent)

CU.2: 6 residues within 4Å: Chain A: H.1, H.78, Q.162, Y.164 Ligands: BGC-BGC-BGC-BGC-BGC-BGC.1, CL.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.78, A:Y.164, H2O.7

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: N.33, T.35, S.36, P.37, Y.153 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.153 Hydrogen bonds: A:N.33, A:T.35, A:Y.153 Water bridges: A:S.36

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain A: H.1, H.147, Q.162 Ligands: BGC-BGC-BGC-BGC-BGC-BGC.1, BGC-BGC-BGC-BGC-BGC-BGC.1, CU.2 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: A.121, A.227, Q.228 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: W.5, G.15, D.16 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: V.31, K.32, N.33 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: A.56, H.131, S.175, D.176 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: R.18, T.68, R.69 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain A: T.35, G.189 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frandsen, K.E.H. et al., Unliganded and substrate bound structures of the cellooligosaccharide active lytic polysaccharide monooxygenase LsAA9A at low pH. Carbohydr. Res. (2017)

Release Date

2017-03-29

Peptides

Auxiliary activity 9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Auxiliary activity 9

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