SMTL ID : 5n4k.1

N-terminal domain of a human Coronavirus NL63 nucleocapsid protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

homo-dimer

Ligands

14 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.24, K.127, R.128 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.128 Water bridges: A:N.129 Salt bridges: A:K.24 SO4.2: 3 residues within 4Å: Chain A: R.71, R.73, L.82 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.71, A:R.71 Salt bridges: A:R.71, A:R.73 SO4.3: 2 residues within 4Å: Chain A: P.29, R.126 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.126 Salt bridges: A:R.126 SO4.4: 3 residues within 4Å: Chain A: Q.69, R.71, K.85 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.69 Salt bridges: A:R.71, A:K.85 SO4.5: 1 residues within 4Å: Chain A: R.49 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.50 Salt bridges: A:R.49 SO4.6: 2 residues within 4Å: Chain A: Y.44 Chain B: R.23 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:R.23 Salt bridges: B:R.23 Hydrogen bonds: A:Y.44 SO4.7: 3 residues within 4Å: Chain A: R.102, W.110 Chain B: R.23 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Water bridges: A:W.110, A:W.110 Salt bridges: A:R.102 Hydrogen bonds: B:R.23 SO4.8: 4 residues within 4Å: Chain A: R.49, N.50, K.113, E.114 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.50, A:E.114 Water bridges: A:R.49 Salt bridges: A:R.49 SO4.9: 4 residues within 4Å: Chain A: W.72, R.79 Chain B: R.126, P.132 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:R.126 Salt bridges: B:R.126, A:R.79 SO4.10: 3 residues within 4Å: Chain B: K.24, K.127, R.128 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.128 Water bridges: B:N.129 Salt bridges: B:K.24 SO4.11: 3 residues within 4Å: Chain B: R.71, R.73, L.82 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.71, B:R.71 Salt bridges: B:R.71, B:R.73 SO4.12: 4 residues within 4Å: Chain A: W.72 Chain B: Q.69, R.71, K.85 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.69, B:Q.69 Water bridges: B:K.85, B:K.85 Salt bridges: B:R.71, B:K.85 SO4.13: 1 residues within 4Å: Chain B: R.49 2 PLIP interactions: 2 interactions with chain B Water bridges: B:N.50 Salt bridges: B:R.49 SO4.14: 5 residues within 4Å: Chain B: R.49, N.50, A.112, K.113, E.114 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.50, B:E.114 Water bridges: B:N.50, B:S.138 Salt bridges: B:R.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szelazek, B. et al., Structural Characterization of Human Coronavirus NL63 N Protein. J. Virol. (2017)

Release Date

2017-02-22

Peptides

Nucleoprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nucleoprotein