SMTL ID : 5n8x.1

Trigonal structure of mutant V173I of 3D polymerase from Foot-and-Mouth Disease Virus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.238, D.240, D.339, T.384 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.238

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: F.34, I.167, T.407, I.411 No protein-ligand interaction detected (PLIP) GOL.3: 3 residues within 4Å: Chain A: R.75, R.262, E.272 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.75, A:R.262, A:E.272 GOL.4: 8 residues within 4Å: Chain A: Y.81, R.84, P.209, Q.210, N.312, L.328, Y.331, M.333 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.84, A:P.209, A:N.312, A:L.328 GOL.5: 8 residues within 4Å: Chain A: V.236, W.237, D.238, P.366, A.367, D.368, V.375, H.378 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.238, A:D.238, A:A.367, A:D.368, A:D.368, A:V.375, A:H.378 GOL.6: 2 residues within 4Å: Chain A: Y.455, R.456 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de la Higuera, I. et al., Molecular and Functional Bases of Selection against a Mutation Bias in an RNA Virus. Genome Biol Evol (2017)

Release Date

2017-05-10

Peptides

3D polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3D polymerase

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