SMTL ID : 5nfr.1

Crystal structure of malate dehydrogenase from Plasmodium falciparum (PfMDH)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-16-mer

Ligands

15 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 12 residues within 4Å: Chain A: I.12, R.81, R.87, V.117, N.119, L.146, R.150, H.174, G.217, I.221, A.228, P.232 Ligand excluded by PLIP CIT.2: 11 residues within 4Å: Chain B: R.81, R.87, V.117, N.119, M.142, L.146, R.150, H.174, G.217, I.221, A.228 Ligand excluded by PLIP CIT.3: 12 residues within 4Å: Chain C: I.12, R.81, R.87, V.117, N.119, L.146, R.150, H.174, G.217, I.221, A.228, P.232 Ligand excluded by PLIP CIT.4: 14 residues within 4Å: Chain D: I.12, R.81, R.87, V.117, N.119, M.142, L.146, R.150, H.174, G.217, I.221, S.227, A.228, P.232 Ligand excluded by PLIP CIT.5: 13 residues within 4Å: Chain E: I.12, R.81, R.87, V.117, N.119, M.142, L.146, R.150, H.174, G.217, I.221, S.227, A.228 Ligand excluded by PLIP CIT.6: 12 residues within 4Å: Chain F: I.12, Q.80, R.81, R.87, V.117, N.119, L.146, R.150, H.174, G.217, I.221, A.228 Ligand excluded by PLIP CIT.7: 13 residues within 4Å: Chain H: I.12, R.81, R.87, N.119, M.142, L.146, R.150, H.174, G.217, I.221, S.227, A.228, P.232 Ligand excluded by PLIP CIT.8: 12 residues within 4Å: Chain I: I.12, R.81, R.87, V.117, N.119, L.146, R.150, H.174, G.217, I.221, S.227, A.228 Ligand excluded by PLIP CIT.9: 11 residues within 4Å: Chain J: I.12, R.81, R.87, N.119, L.146, R.150, H.174, G.217, I.221, A.228, P.232 Ligand excluded by PLIP CIT.10: 12 residues within 4Å: Chain K: I.12, R.81, R.87, V.117, N.119, L.146, R.150, H.174, G.217, I.221, S.227, A.228 Ligand excluded by PLIP CIT.11: 13 residues within 4Å: Chain L: I.12, R.81, R.87, V.117, N.119, M.142, L.146, R.150, H.174, G.217, I.221, S.227, A.228 Ligand excluded by PLIP CIT.12: 13 residues within 4Å: Chain M: I.12, R.81, R.87, V.117, N.119, M.142, L.146, R.150, H.174, G.217, I.221, A.228, P.232 Ligand excluded by PLIP CIT.13: 11 residues within 4Å: Chain N: I.12, Q.80, R.81, R.87, V.117, N.119, R.150, H.174, G.217, I.221, A.228 Ligand excluded by PLIP CIT.14: 13 residues within 4Å: Chain O: I.12, R.81, R.87, V.117, N.119, M.142, L.146, R.150, H.174, G.217, S.227, A.228, P.232 Ligand excluded by PLIP CIT.15: 13 residues within 4Å: Chain P: I.12, R.81, R.87, V.117, N.119, M.142, L.146, R.150, H.174, G.217, I.221, S.227, A.228 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lunev, S. et al., Oligomeric interfaces as a tool in drug discovery: Specific interference with activity of malate dehydrogenase of Plasmodium falciparum in vitro. PLoS ONE (2018)

Release Date

2018-01-31

Peptides

Malate dehydrogenase: ABCDEFGHIJKLMNOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Malate dehydrogenase