SMTL ID : 5ni0.1 (1 other biounit)

VIM-2_10c. Metallo-beta-Lactamase Inhibitors by Bioisosteric Replacement: Preparation, Activity and Binding

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.114, H.116, H.179 Ligands: 8XW.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.114, A:H.116, A:H.179, H2O.2 ZN.2: 6 residues within 4Å: Chain A: H.114, D.118, R.119, C.198, H.240 Ligands: 8XW.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.118, A:C.198, A:H.240

1 x 8XW: [(2~{R})-1-ethanoylsulfanyl-6-phenyl-hexan-2-yl]phosphonic acid(Non-covalent)

8XW.3: 16 residues within 4Å: Chain A: F.62, Y.67, P.68, W.87, H.114, H.116, D.117, D.118, H.179, C.198, R.205, G.209, N.210, H.240 Ligands: ZN.1, ZN.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.62, A:Y.67, A:Y.67, A:Y.67, A:W.87, A:H.240 Hydrogen bonds: A:W.87, A:D.117, A:D.118, A:R.205, A:N.210 Water bridges: A:R.205, A:G.209 pi-Stacking: A:H.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skagseth, S. et al., Metallo-beta-lactamase inhibitors by bioisosteric replacement: Preparation, activity and binding. Eur J Med Chem (2017)

Release Date

2017-04-26

Peptides

Beta-lactamase class B VIM-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase class B VIM-2

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