SMTL ID : 5nkk.3 (2 other biounits)

SMG8-SMG9 complex GDP bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

hetero-1-1-mer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: S.130, Q.192 No protein-ligand interaction detected (PLIP)

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 12 residues within 4Å: Chain B: P.36, Q.37, G.40, K.41, S.42, T.43, P.64, V.65, S.66, K.183, E.226 Ligands: MG.3 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:G.40, B:G.40, B:K.41, B:S.42, B:T.43, B:T.43, B:V.65, B:S.66, B:K.183 Water bridges: B:C.93 Salt bridges: B:K.41

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain B: S.42, D.92 Ligands: GDP.2 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.42, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, L. et al., Structure of a SMG8-SMG9 complex identifies a G-domain heterodimer in the NMD effector proteins. RNA (2017)

Release Date

2017-04-19

Peptides

Protein smg-8: A
Protein smg-9: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Protein smg-8

Protein smg-9

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