SMTL ID : 5nlm.1 (1 other biounit)

Complex between a UDP-glucosyltransferase from Polygonum tinctorium capable of glucosylating indoxyl and indoxyl sulfate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

1 x IOS: 3-SULFOOXY-1H-INDOLE(Non-covalent)

IOS.1: 15 residues within 4Å: Chain A: H.27, I.88, E.89, M.92, L.124, F.125, S.146, T.150, F.154, I.189, P.191, Y.393, A.394, E.395 Ligands: MG.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.124, A:A.394, A:E.395 Hydrogen bonds: A:E.89 Salt bridges: A:H.27 pi-Stacking: A:F.125, A:F.125

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 7 residues within 4Å: Chain A: I.88, E.89, D.190, P.191, Y.393, A.394 Ligands: IOS.1 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain A: H.371, G.373, N.375, S.376 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain A: G.366, P.386, R.443 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:G.366 MG.5: 3 residues within 4Å: Chain A: P.53, P.54, R.59 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:P.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hsu, T.M. et al., Employing a biochemical protecting group for a sustainable indigo dyeing strategy. Nat. Chem. Biol. (2018)

Release Date

2018-01-31

Peptides

indoxyl UDP-glucosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

indoxyl UDP-glucosyltransferase

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