SMTL ID : 5nln.1

Auxiliary activity 9

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose(Non-covalent)

XYP-XYP.1: 9 residues within 4Å: Chain A: H.1, S.77, H.78, H.147, E.148 Ligands: CL.4, CL.11, XYP.14, XYP.15 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.164, A:Y.164, A:S.77, A:S.77, A:E.148 Water bridges: A:S.77

1 x CU: COPPER (II) ION(Non-covalent)

CU.2: 5 residues within 4Å: Chain A: H.1, H.78, Q.162, Y.164 Ligands: CL.11 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.78, A:Y.164, H2O.7, H2O.10

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: N.33, T.35, S.36, P.37, Y.153 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.153 Hydrogen bonds: A:N.33, A:T.35, A:Y.153 Water bridges: A:S.36

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: H.147, Q.162 Ligands: XYP-XYP.1, XYP-XYP.1 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: A.121, A.227, Q.228 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: W.5, G.15, D.16 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: A.56, H.131, S.175, D.176 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: K.50, S.51 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: S.126, G.224, S.225 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: V.31, K.32, N.33 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain A: H.1, H.78 Ligands: XYP-XYP.1, CU.2 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: T.35, G.189 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain A: R.18, T.68, R.69 Ligand excluded by PLIP

3 x XYP: beta-D-xylopyranose(Non-covalent)

XYP.14: 5 residues within 4Å: Chain A: H.1, N.28, H.66, N.67 Ligands: XYP-XYP.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.28, A:N.67 Water bridges: A:N.28, A:N.28, A:N.29, A:N.29 Salt bridges: A:H.66 XYP.15: 6 residues within 4Å: Chain A: H.147, E.148, R.159, Y.203 Ligands: XYP-XYP.1, XYP.16 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.148, A:E.148, A:R.159, A:R.159 XYP.16: 2 residues within 4Å: Chain A: Y.203 Ligands: XYP.15 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simmons, T.J. et al., Structural and electronic determinants of lytic polysaccharide monooxygenase reactivity on polysaccharide substrates. Nat Commun (2017)

Release Date

2017-11-01

Peptides

Auxiliary activity 9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Auxiliary activity 9

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