SMTL ID : 5nls.1

Auxiliary activity 9

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose

BGC-BGC-BGC-BGC-BGC.1: 15 residues within 4Å: Chain A: H.1, N.28, H.66, N.67, A.75, S.77, H.78, H.147, E.148, D.150, R.159, Y.203 Ligands: CU.2, CL.5, CL.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.150, A:N.28, A:Y.164, A:Y.164

1 x CU: COPPER (II) ION(Non-covalent)

CU.2: 6 residues within 4Å: Chain A: H.1, H.78, Q.162, Y.164 Ligands: BGC-BGC-BGC-BGC-BGC.1, CL.5 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.78, A:Y.164

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: N.33, T.35, S.36, P.37, Y.153 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.153 Hydrogen bonds: A:N.33, A:T.35, A:Y.153 Water bridges: A:S.36

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Chain A: R.18 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain A: H.1, H.147, Q.162 Ligands: BGC-BGC-BGC-BGC-BGC.1, BGC-BGC-BGC-BGC-BGC.1, CU.2 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: H.66 Ligands: BGC-BGC-BGC-BGC-BGC.1 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simmons, T.J. et al., Structural and electronic determinants of lytic polysaccharide monooxygenase reactivity on polysaccharide substrates. Nat Commun (2017)

Release Date

2017-11-01

Peptides

Auxiliary activity 9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Auxiliary activity 9

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