SMTL ID : 5nns.1 (1 other biounit)

Crystal structure of HiLPMO9B

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: P.200, I.204, E.212, N.214, Y.215, T.216 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.200, A:I.204, A:Y.215 Hydrogen bonds: A:E.212, A:N.214, A:T.216 NAG.2: 4 residues within 4Å: Chain A: W.13, Y.74, N.133 Ligands: GOL.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.133

1 x CU: COPPER (II) ION(Non-covalent)

CU.3: 4 residues within 4Å: Chain A: H.1, H.80, Y.167 Ligands: GOL.9 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.1, A:H.80, A:Y.167

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: P.38, I.39, T.40, D.41, D.44, I.51 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.38, A:T.40, A:D.41, A:D.44, A:D.44 GOL.5: 4 residues within 4Å: Chain A: S.198, D.199, P.200, N.203 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.203 GOL.6: 5 residues within 4Å: Chain A: I.109, S.139, P.141, W.223, Q.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.223, A:Q.224 Water bridges: A:Q.224 GOL.7: 8 residues within 4Å: Chain A: S.8, L.9, A.10, G.11, S.70, V.71, T.72, T.137 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.11, A:S.70, A:T.72 GOL.8: 5 residues within 4Å: Chain A: Y.207, S.208, H.209, E.210, T.211 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.210, A:T.211 Water bridges: A:S.208 GOL.9: 6 residues within 4Å: Chain A: H.1, H.80, H.159, T.160, Q.165 Ligands: CU.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.160, A:T.160, A:Q.165 GOL.10: 3 residues within 4Å: Chain A: G.127, Q.128, A.131 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.127 GOL.11: 6 residues within 4Å: Chain A: W.75, N.76, Q.77, N.133, N.134 Ligands: NAG.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.77, A:N.133, A:N.134

2 x AKR: ACRYLIC ACID(Non-covalent)

AKR.12: 5 residues within 4Å: Chain A: K.108, Q.111, I.217, G.219, P.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.111, A:Q.111 Water bridges: A:I.217 Salt bridges: A:K.108 AKR.13: 1 residues within 4Å: Chain A: N.21 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.21

1 x NA: SODIUM ION(Non-functional Binders)

NA.14: 4 residues within 4Å: Chain A: S.62, D.95, T.97, Q.172 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.62, A:D.95, A:T.97, A:Q.172 Water bridges: A:D.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, B. et al., Structural and molecular dynamics studies of a C1-oxidizing lytic polysaccharide monooxygenase from Heterobasidion irregulare reveal amino acids important for substrate recognition. FEBS J. (2018)

Release Date

2018-05-16

Peptides

Glycosyl hydrolase family 61, 2 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyl hydrolase family 61, 2 protein

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