SMTL ID : 5nvi.1

Crystal structure of murine neuroglobin under 50 bar argon pressure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 14 residues within 4Å: Chain A: L.36, L.39, F.40, Y.42, H.62, K.65, V.66, V.69, Y.86, L.90, H.94, V.99, F.104, V.107 22 PLIP interactions: 22 interactions with chain A, Hydrophobic interactions: A:L.36, A:F.40, A:F.40, A:Y.42, A:K.65, A:K.65, A:V.66, A:V.69, A:V.69, A:V.69, A:L.90, A:V.99, A:F.104, A:V.107, A:V.107 Hydrogen bonds: A:Y.42 Water bridges: A:K.65, A:K.65 Salt bridges: A:H.62, A:K.65 Metal complexes: A:H.62, A:H.94

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: S.17, P.18, L.19, E.20, R.64 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.19, A:E.20 Water bridges: A:E.20 Salt bridges: A:R.64

1 x AR: ARGON(Non-covalent)

AR.3: 2 residues within 4Å: Chain A: L.134, Y.135 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Colloc'h, N. et al., Mapping Hydrophobic Tunnels and Cavities in Neuroglobin with Noble Gas under Pressure. Biophys. J. (2017)

Release Date

2017-11-15

Peptides

Neuroglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neuroglobin

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