SMTL ID : 5nw3.1

The cryofrozen atomic resolution X-ray crystal structure of perdeuterated Pyrococcus furiosus Rubredoxin (100K, 0.59A resolution)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.59 Å

Oligo State

monomer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 8 residues within 4Å: Chain A: C.6, I.8, C.9, Y.11, C.39, I.41, C.42, A.44 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.6, A:C.9, A:C.39, A:C.42

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: E.31, K.46 Ligands: K.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.31 Water bridges: A:D.35, A:K.46

1 x K: POTASSIUM ION(Non-covalent)

K.3: 3 residues within 4Å: Chain A: E.31, K.46 Ligands: NA.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.31, H2O.2, H2O.5, H2O.5, H2O.5

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 3 residues within 4Å: Chain A: N.22, P.40, I.41 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.40, A:P.40 Water bridges: A:N.22, A:N.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuypers, M.G. et al., The cryofrozen atomic resolution X-ray crystal structure of perdeuterated Pyrococcus furiosus Rubredoxin (100K, 0.59A resolution). To Be Published

Release Date

2017-06-07

Peptides

Rubredoxin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Rubredoxin

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