- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.73 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x G39: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid(Non-covalent)
G39.5: 14 residues within 4Å:- Chain A: R.37, E.38, D.70, R.71, W.98, I.142, R.144, N.166, E.196, E.197, R.212, N.214, R.287, Y.321
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:W.98, A:I.142, A:N.166
- Hydrogen bonds: A:E.38, A:R.71, A:Y.321
- Water bridges: A:D.70, A:R.75, A:E.197, A:E.197
- Salt bridges: A:R.37, A:R.212, A:R.287
G39.11: 14 residues within 4Å:- Chain B: R.37, E.38, D.70, R.71, W.98, I.142, R.144, N.166, E.196, E.197, R.212, N.214, R.287, Y.321
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:W.98
- Hydrogen bonds: B:E.38, B:R.71, B:Y.321
- Water bridges: B:R.75, B:E.147, B:R.212
- Salt bridges: B:R.37, B:R.212, B:R.287
G39.17: 15 residues within 4Å:- Chain C: R.37, E.38, D.70, R.71, W.98, I.142, R.144, N.166, E.196, E.197, R.212, N.214, R.287, Y.321
- Ligands: EDO.20
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:W.98, C:I.142, C:N.166
- Hydrogen bonds: C:E.38, C:R.71, C:Y.321
- Water bridges: C:D.70, C:E.197
- Salt bridges: C:R.37, C:R.212, C:R.287
G39.23: 14 residues within 4Å:- Chain D: R.37, E.38, D.70, R.71, W.98, I.142, R.144, N.166, E.196, E.197, R.212, N.214, R.287, Y.321
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:W.98, D:N.166
- Hydrogen bonds: D:E.38, D:R.71
- Water bridges: D:D.70, D:R.75, D:E.147, D:E.147
- Salt bridges: D:R.37, D:R.212, D:R.287
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.6: 1 residues within 4Å:- Chain A: N.65
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.65
NAG.7: 2 residues within 4Å:- Chain A: K.3, N.154
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.3, A:N.154
- Water bridges: A:N.154
NAG.12: 1 residues within 4Å:- Chain B: N.7
No protein-ligand interaction detected (PLIP)NAG.13: 2 residues within 4Å:- Chain A: E.381
- Chain B: N.65
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.65
NAG.14: 2 residues within 4Å:- Chain B: K.3, N.154
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.154
NAG.18: 1 residues within 4Å:- Chain C: N.7
No protein-ligand interaction detected (PLIP)NAG.19: 2 residues within 4Å:- Chain C: K.3, N.154
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.154
NAG.24: 2 residues within 4Å:- Chain D: K.3, N.154
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.154
- Water bridges: D:Q.227, D:Q.227
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.8: 4 residues within 4Å:- Chain A: W.374, S.375
- Chain B: P.73, Y.74
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:Y.74, A:S.375
- Water bridges: A:S.375, A:S.375
EDO.20: 3 residues within 4Å:- Chain C: I.68, D.70
- Ligands: G39.17
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:I.68
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pokorna, J. et al., Kinetic, Thermodynamic, and Structural Analysis of Drug Resistance Mutations in Neuraminidase from the 2009 Pandemic Influenza Virus. Viruses (2018)
- Release Date
- 2018-07-04
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.73 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x G39: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid(Non-covalent)
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pokorna, J. et al., Kinetic, Thermodynamic, and Structural Analysis of Drug Resistance Mutations in Neuraminidase from the 2009 Pandemic Influenza Virus. Viruses (2018)
- Release Date
- 2018-07-04
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D