SMTL ID : 5o41.1

Low-dose fixed target serial synchrotron crystallography structure of sperm whale myoglobin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 17 residues within 4Å: Chain A: T.40, K.43, F.44, R.46, H.65, T.68, V.69, A.72, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, F.139 Ligands: CMO.3 19 PLIP interactions: 18 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:F.44, A:F.44, A:F.44, A:T.68, A:V.69, A:A.72, A:L.90, A:L.90, A:I.100, A:Y.104, A:F.139 Hydrogen bonds: A:S.93 Salt bridges: A:R.46, A:H.65, A:H.94, A:H.98 pi-Stacking: A:H.98 Metal complexes: A:H.94, CMO.3

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: A.58, S.59, E.60, D.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.60, A:D.61 SO4.4: 2 residues within 4Å: Chain A: H.13, K.17 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.13, A:K.17

1 x CMO: CARBON MONOXIDE(Non-functional Binders)

CMO.3: 5 residues within 4Å: Chain A: F.44, H.65, V.69, H.94 Ligands: HEM.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Owen, R.L. et al., Low-dose fixed-target serial synchrotron crystallography. Acta Crystallogr D Struct Biol (2017)

Release Date

2017-06-14

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin

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