SMTL ID : 5o4p.2 (1 other biounit)

Crystal structure of AMPylated GRP78

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Covalent)

AMP.1: 2 residues within 4Å: Chain A: G.491, T.492 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.492

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: G.32, N.33, R.34, I.35 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.34, A:I.35 Water bridges: A:E.366, A:E.366 SO4.3: 8 residues within 4Å: Chain A: G.10, T.11, K.70, E.175, G.200, G.201, G.202, A.203 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.11, A:T.11, A:G.200, A:G.201, A:G.202, A:A.203, A:A.203 Water bridges: A:D.8, A:L.9, A:K.70 Salt bridges: A:K.70 SO4.4: 4 residues within 4Å: Chain A: Q.156, K.159, T.163, R.506 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.156, A:T.163 Water bridges: A:R.506, A:R.506 Salt bridges: A:K.159, A:R.506 SO4.5: 1 residues within 4Å: Chain A: N.502 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.502 Water bridges: A:R.506 SO4.6: 2 residues within 4Å: Chain A: D.307, R.310 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.310 SO4.7: 3 residues within 4Å: Chain A: Q.276, H.277, Q.278 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.277, A:Q.278 SO4.8: 4 residues within 4Å: Chain A: A.272, Q.276, A.279, R.280 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.276, A:R.280 SO4.9: 5 residues within 4Å: Chain A: I.362, N.363, E.366, A.367, Y.370 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.363

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Preissler, S. et al., AMPylation targets the rate-limiting step of BiP's ATPase cycle for its functional inactivation. Elife (2017)

Release Date

2017-11-01

Peptides

78 kDa glucose-regulated protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

78 kDa glucose-regulated protein

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